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Affibody
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Biomol GmbH
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Sciomics Inc
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Millar Inc
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BD Diagnostics
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Image Search Results
Journal: bioRxiv
Article Title: SARS-CoV-2 Spike Affinity and Dynamics Exclude the Strict Requirement of an Intermediate Host
doi: 10.1101/2021.08.11.455960
Figure Lengend Snippet: (a) Amino acid differences of RaTG13/SARS-CoV-2 RBD and affi ACE2/hACE2. Proteins are depicted in ribbon, with the RBD/ACE2 binding interface at 8 Å in yellow and red transparent surface, respectively. Amino acid differences are depicted as spheres colored according to the distance from the binding interface: RBD and ACE2 mutations below 8 Å are in yellow and red, mutations above 8 Å in purple and cyan, respectively. (b) Identification of affi ACE2 allele associated to RaTG13. The regions of affi ACE2 mRNA covered by SRA reads from dataset SRR11085797 are depicted as yellow bars in the upper panel. Polymorphic sites and relative frequencies were generated with WebLogo . Sites not covered by SRA reads are reported in red. Amino acid identity percentage considering covered regions (in bold) or the entire deposited sequences (in brackets) are reported in the lower panel. Identical sequences were collapsed into a single representative. The full comparison of all deposited affi ACE2 sequences is reported in .
Article Snippet: hACE2 or
Techniques: Binding Assay, Generated
Journal: bioRxiv
Article Title: SARS-CoV-2 Spike Affinity and Dynamics Exclude the Strict Requirement of an Intermediate Host
doi: 10.1101/2021.08.11.455960
Figure Lengend Snippet: (a) Surface plasmon resonance measurements. Blank subtracted sensograms (black curves) of the RaTG13 and SARS-CoV-2 RBDs on immobilized hACE2 and affi ACE2. A 1:1 binding model was used for data fitting. Shown data are the mean of four replicates. (b) Structure comparison of SARS-CoV-2 (PDB ID: 6M17) and RaTG13 (reported here) RBD/hACE2 complexes. Whole structures are depicted in ribbon, hACE2, RaTG13 RBD and SARS-CoV-2 RBD are colored in shades of blue, pink and green, respectively. The side chain of RaTG13/SARS-CoV-2 mutations are reported in licorice.
Article Snippet: hACE2 or
Techniques: SPR Assay, Binding Assay
Journal: bioRxiv
Article Title: SARS-CoV-2 Spike Affinity and Dynamics Exclude the Strict Requirement of an Intermediate Host
doi: 10.1101/2021.08.11.455960
Figure Lengend Snippet: In the upper panel is reported a representative structure of the complex after having reached the equilibrium. ACE2, RBD and spike reminder are depicted in green, red and white, respectively. In the lower panel is reported the RMSD (root mean square deviation) of the entire complex (heavy atoms only) along the 200 ns unbiased MD simulation.
Article Snippet: hACE2 or
Techniques:
Journal: bioRxiv
Article Title: SARS-CoV-2 Spike Affinity and Dynamics Exclude the Strict Requirement of an Intermediate Host
doi: 10.1101/2021.08.11.455960
Figure Lengend Snippet: Final frames of the SMD simulations at the target Φ angle (60° and −15°). The final Ψ angle necessary to accommodate RBDs rotation is reported for each protomer. The starting conformation is represented in transparent surface, the final conformations in ribbon. The spike protomers are colored in yellow, cyan and red, ACE2 molecules in green.
Article Snippet: hACE2 or
Techniques: